Protocols

HabiSign specifications

Information


Unique identifier OMICS_28128
Name HabiSign
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Maintainer


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Publication for HabiSign

HabiSign citations

 (2)
library_books

Alignment free supervised classification of metagenomes by recursive SVM

2013
BMC Genomics
PMCID: 3849074
PMID: 24053649
DOI: 10.1186/1471-2164-14-641

[…] enomes, then used PCA (principal component analysis) and hierarchical clustering to show “definitive groupings of metagenomes drawn from similar environment”. Ghosh et al [] developed a method called HabiSign which uses tetra-nucleotide patterns of metagenomic sequences to cluster the samples at biome, phenotypic and species levels. Jiang et al [] studied several major dissimilarity measures with […]

call_split

Metagenome of the gut of a malnourished child

2011
PMCID: 3115890
PMID: 21599906
DOI: 10.1186/1757-4749-3-7
call_split See protocol

[…] nomic level, and subsequently enumerating the number of assignments to various taxa at that level.Sequences specific to either the malnourished or the healthy child data set were identified using the HabiSign algorithm (TSG et al., manuscript communicated). This algorithm identifies sequences specific to a data set by first mapping all sequences to pre-computed points in feature vector space. Subs […]

HabiSign institution(s)
Bio-sciences R&D Division, TCS Innovation Labs, Tata Consultancy Services Limited, Hyderabad, India

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