HALC specifications

Information


Unique identifier OMICS_17398
Name HALC
Alternative name High Throughput Algorithm for Long Read Error Correction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some long and short reads.
Input format FASTA
Output data Some error corrected.
Operating system Unix/Linux
Programming languages C++
License Artistic License version 2.0
Computer skills Advanced
Stability Stable
Requirements BLASR, LoRDEC
Maintained Yes

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Maintainer


  • person_outline Ergude Bao <>

Publication for High Throughput Algorithm for Long Read Error Correction

HALC institution(s)
School of Software Engineering, Beijing Jiaotong University, Haidian District, Beijing, China; Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA
HALC funding source(s)
Supported by grants from the National Science Foundation of China [61502027] and the Fundamental Research Funds for the Central Universities [2015RC045].

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