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HAlign

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Alternative name: HAlign-II

Provides a fast-multiple similar DNA/RNA sequence alignment method. HAlign is a multiple sequence alignment (MSA) application based on the centre star strategy. The goal of this application is ultra-large biological sequences dataset included protein sequences and nucleotide sequences. This package can be used on all platforms and employs center star multiple sequence alignment strategy.

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2 user reviews

2 user reviews

Quan Zou's avatar image

Quan Zou

The new URL is http://lab.malab.cn/soft/halign/index.html.

Web servers have been developed by the authors.

James London's avatar image

James London

A good tool on Hadoop platform

HAlign forum

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HAlign classification

HAlign specifications

Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Advanced
High performance computing:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Parallelization:
MapReduce
Stability:
Stable
Maintained:
Yes

HAlign distribution

versioning

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No versioning.

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0 user reviews

0 user reviews

No review has been posted.

HAlign forum

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No open topic.

HAlign classification

HAlign specifications

Software type:
Restrictions to use:
None
Programming languages:
Java
Interface:
Web user interface
Input format:
FASTA
Parallelization:
MapReduce

HAlign distribution

download

HAlign support

Maintainer

  • Quan Zou <>
This tool is not maintained anymore.

Credits

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Publications

Institution(s)

School of Computer Science and Technology, Tianjin University, Tianjin, China; Guangdong Province Key Laboratory of Popular High Performance Computers, Shenzhen University, Shenzhen, China

Link to literature

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