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A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input file should be a fasta DNA or RNA file. You can use this tool in any OS with JVM.

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2 user reviews

Quan Zou's avatar image

Quan Zou

The new URL is http://lab.malab.cn/soft/halign/index.html.

Web servers have been developed by the authors.

James London's avatar image

James London

A good tool on Hadoop platform

HAlign forum

HAlign classification

HAlign specifications

Software type:
Framework
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Unix/Linux
Parallelization:
MapReduce
Stability:
Stable

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HAlign forum

No open topic.

HAlign classification

HAlign specifications

Software type:
Standalone
Restrictions to use:
None
Programming languages:
Java
Interface:
Web user interface
Input format:
FASTA
Parallelization:
MapReduce

HAlign support

Maintainer

  • Quan Zou <>

Credits

Publications

Institution(s)

School of Computer Science and Technology, Tianjin University, Tianjin, China

Link to literature

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