HAlign pipeline

HAlign specifications

Information


Unique identifier OMICS_07879
Name HAlign
Alternative name HAlign-II
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Parallelization MapReduce
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

Versioning


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Maintainer


  • person_outline Quan Zou <>

Information


Unique identifier OMICS_07879
Name HAlign
Alternative name HAlign-II
Software type
Interface Web user interface
Restrictions to use None
Input format FASTA
Programming languages Java
Parallelization MapReduce

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Maintainer


This tool is not maintained anymore.

Publications for HAlign

HAlign IN pipeline

2016
PMCID: 4961832
PMID: 27478823
DOI: 10.1155/2016/7604641

[…] combinatorial machine learning strategy that can improve prediction accuracy., machine learning techniques instead of traditional sequence alignment methods, such as psi-blast [1], hmmer [2], and halign [3], are often used to identify special proteins. among these identification techniques, a support vector machine is the most common classifier used in computational proteomics, which involves […]

HAlign institution(s)
School of Computer Science and Technology, Tianjin University, Tianjin, China; Guangdong Province Key Laboratory of Popular High Performance Computers, Shenzhen University, Shenzhen, China

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