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- person_outline Shiladitya DasSarma
Publication for HaloWeb
Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34
[…] RNAScanSE tool  was used to find tRNA genes. Additional gene prediction analysis and manual functional annotation was performed within the Integrated Microbial Genomes Expert Review (IMG-ER)  and HaloWeb  platform. […]
Cloning, overexpression, purification, and characterization of a polyextremophilic β galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi
[…] Bioinformatic analysis of the H. lacusprofundi genome was conducted using tools on the Carbohydrate Active Enzymes (CAZY) database (http://www.cazy.org) and the HaloWeb site (http://halo4.umbi.umd.edu) [,]. The HaloWeb site provided access to the H. lacusprofundi genome information, including genetic maps, gene functions, DNA and protein sequences, and haloar […]
The core and unique proteins of haloarchaea
[…] s . Conserved protein clusters were used to construct orthologous groups using in-house Perl scripts and manual navigation of data stored in a MySQL database and served on our Linux-Apache servers (HaloWeb - http://halo4.umbi.umd.edu) . Subsequently, we analyzed four additional sequences using our HOGnitor, via BLAST analysis. Similar non-haloarchaeal proteins were identified with BLAST analys […]
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