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Protocols

HaloWeb specifications

Information


Unique identifier OMICS_16670
Name HaloWeb
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Shiladitya DasSarma

Publication for HaloWeb

HaloWeb citations

 (3)
library_books

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

2016
Stand Genomic Sci
PMCID: 5018182
PMID: 27617060
DOI: 10.1186/s40793-016-0194-2

[…] RNAScanSE tool [] was used to find tRNA genes. Additional gene prediction analysis and manual functional annotation was performed within the Integrated Microbial Genomes Expert Review (IMG-ER) [] and HaloWeb [] platform. […]

call_split

Cloning, overexpression, purification, and characterization of a polyextremophilic β galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi

2013
BMC Biotechnol
PMCID: 3556326
PMID: 23320757
DOI: 10.1186/1472-6750-13-3
call_split See protocol

[…] Bioinformatic analysis of the H. lacusprofundi genome was conducted using tools on the Carbohydrate Active Enzymes (CAZY) database (http://www.cazy.org) and the HaloWeb site (http://halo4.umbi.umd.edu) [,]. The HaloWeb site provided access to the H. lacusprofundi genome information, including genetic maps, gene functions, DNA and protein sequences, and haloar […]

call_split

The core and unique proteins of haloarchaea

2012
BMC Genomics
PMCID: 3287961
PMID: 22272718
DOI: 10.1186/1471-2164-13-39
call_split See protocol

[…] s []. Conserved protein clusters were used to construct orthologous groups using in-house Perl scripts and manual navigation of data stored in a MySQL database and served on our Linux-Apache servers (HaloWeb - http://halo4.umbi.umd.edu) []. Subsequently, we analyzed four additional sequences using our HOGnitor, via BLAST analysis. Similar non-haloarchaeal proteins were identified with BLAST analys […]

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HaloWeb institution(s)
Department of Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, MD, USA; Graduate Program in Life Sciences, University of Maryland School of Medicine, Baltimore, MD, USA
HaloWeb funding source(s)
This work was supported by the Henry M. Jackson Foundation grant HU0001-09-1- 0002-660883, the National Aeronautics and Space Administration grant NNX09AC68G, and the National Science Foundation grant MCB-0450695.

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