HAMR specifications

Information


Unique identifier OMICS_10437
Name HAMR
Alternative name High-throughput Annotation of Modified Ribonucleotides
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A sequence-read alignment in BAM format (consisting of uniquely mapped reads).
Output data It produces a table of genome coordinates and nucleotide frequencies at those coordinates.
Operating system Unix/Linux
Computer skills Advanced
Version 1.2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Li-San Wang <>

Information


Unique identifier OMICS_10437
Name HAMR
Alternative name High-throughput Annotation of Modified Ribonucleotides
Interface Web user interface
Restrictions to use None
Input data A sequence-read alignment in BAM format (consisting of uniquely mapped reads).
Output data It produces a table of genome coordinates and nucleotide frequencies at those coordinates.
Computer skills Basic
Version 1.2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Li-San Wang <>

Publication for High-throughput Annotation of Modified Ribonucleotides

HAMR institution(s)
Genomics and Computational Biology Graduate Group, University of Pennsylvania, Philadelphia, PA, USA

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