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HandAlign specifications


Unique identifier OMICS_14256
Name HandAlign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Ian H Holmes <>

Publication for HandAlign

HandAlign in publication

PMCID: 4509550
PMID: 26186661
DOI: 10.1038/gt.2015.74

[…] demonstrated clinical efficacy (aav1, glybera), biomedical interest (aav6 ), or relative resistance to neutralizing antibodies (aav7 )., we then used the markov chain monte carlo alignment sampler handalign to explore alignment space and predict the ancestral sequence of the most likely alignment at node 27. handalign generates a multiple sequence alignment, arranging the sequences […]

HandAlign institution(s)
Department of Bioengineering, University of California Berkeley, CA, USA
HandAlign funding source(s)
National Institutes of Health/National Human Genome Research Institute grant (R01-GM076705)

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