HAP-SAMPLE specifications

Information


Unique identifier OMICS_15324
Interface Web user interface
Restrictions to use None
Input data Inputs consist of the disease model file (the various types of specifications are given above) with specific rs#’s for the disease SNPs, and a file listing SNPs to be ‘genotyped’.
Output data Output consists of SNP genotypes, reflecting current typing technologies. In addition, the output contains the simulated haplotypes, which are useful in evaluating the success of haplotype reconstruction approaches.
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

HAP-SAMPLE article

HAP-SAMPLE institution(s)
Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA; Center for Genome Sciences, University of North Carolina, Chapel Hill, NC, USA; Center for Environmental Bioinformatics, University of North Carolina, Chapel Hill, NC, USA; Renaissance Computing Institute, Europa Drive, University of North Carolina Chapel Hill, NC, USA; School of Pharmacy, University of North Carolina Chapel Hill, NC, USA; Department of Genetics, University of North Carolina Chapel Hill, NC, USA
HAP-SAMPLE funding source(s)
This work was supported by the Carolina Center for Exploratory Genetic Analysis (P20 RR020751), the Carolina Environmental Bioinformatics Research Center (EPA RD-83272001), NIH grants P30ES10126, P50 GM076468, R01 GM074175 and R01 HL068890, and CF Foundation Zou05P0.

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