hapAssembly statistics

info info

Citations per year

info

Popular tool citations

chevron_left Haplotype assembly chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

hapAssembly specifications

Information


Unique identifier OMICS_08168
Name hapAssembly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Zhi-Zhong Chen <>

Publication for hapAssembly

hapAssembly citation

library_books

Efficient algorithms for polyploid haplotype phasing

2018
PMCID: 5954289
PMID: 29764364
DOI: 10.1186/s12864-018-4464-9

[…] et al. [] combined this dynamic programming method with a heuristic approach. mousavi et al. [] suggested a hapsat model by converting the haplotype determination problem to a max-2-sat problem. hapassembly converts the haplotype assembly problem to an integer linear programming problem for optimization []. harsh [] applied a gibbs sampling algorithm to phase diploid haplotypes. whatshap [] […]


Want to access the full list of citations?
hapAssembly institution(s)
Division of Information System Design, Tokyo Denki University, Saitama, Japan; Department of Computer Science, City University of Hong Kong, Hong Kong
hapAssembly funding source(s)
L.W. is supported by a grant from City University of Hong Kong [Project No. 7002728].

hapAssembly reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review hapAssembly