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hapAssembly specifications


Unique identifier OMICS_08168
Name hapAssembly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Zhi-Zhong Chen <>

Publication for hapAssembly

hapAssembly citation


Efficient algorithms for polyploid haplotype phasing

PMCID: 5954289
PMID: 29764364
DOI: 10.1186/s12864-018-4464-9

[…] et al. [] combined this dynamic programming method with a heuristic approach. mousavi et al. [] suggested a hapsat model by converting the haplotype determination problem to a max-2-sat problem. hapassembly converts the haplotype assembly problem to an integer linear programming problem for optimization []. harsh [] applied a gibbs sampling algorithm to phase diploid haplotypes. whatshap [] […]

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hapAssembly institution(s)
Division of Information System Design, Tokyo Denki University, Saitama, Japan; Department of Computer Science, City University of Hong Kong, Hong Kong
hapAssembly funding source(s)
L.W. is supported by a grant from City University of Hong Kong [Project No. 7002728].

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