HAPDeNovo statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

HAPDeNovo specifications


Unique identifier OMICS_23976
Name HAPDeNovo
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some paired-end reads.
Input format FASTQ
Output data A flat file containing high-confidence DNMs annotated by H, and low-confidence DNMs annotated by L.
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Lu Zhang <>

Additional information

Supported by NIH/NCI and the BRCA foundation.

Publication for HAPDeNovo

HAPDeNovo institution(s)
Department of Computer Science, Stanford University, Stanford, CA, USA; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA

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