Haplin pipeline

Haplin specifications


Unique identifier OMICS_21755
Name Haplin
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 6.2.0
Stability Stable
Maintained Yes


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  • person_outline Hakon Gjessing <>
  • person_outline Hakon Gjessing <>

Additional information


Publications for Haplin

Haplin citation

PMCID: 4354917

[…] their biologic parents assuming mendelian inheritance with or without hardy–weinberg equilibrium (hwe) was performed [weinberg et al., 1998, wilcox et al., 1998, weinberg, 1999], using the program haplin (version 5.3) [gjessing and lie, 2006]. this program was chosen because it was specifically designed to analyze genetic risk factors in offspring-parent triads and case–control collections, […]

Haplin institution(s)
Department of Global Public Health and Primary Care, University of Bergen, Bergen, Norway; Department of Genetics and Bioinformatics, Norwegian Institute of Public Health (NIPH), Oslo, Norway; Centre for Fertility and Health (CeFH), Norwegian Institute of Public Health, Oslo, Norway; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences (NIH/NIEHS), Durham, NC, USA; Department of Epidemiology, School of Public Health, Johns Hopkins University, Baltimore, MD, USA; Center for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Department of Pediatrics, University of Iowa, Iowa City, IA, USA; Epidemiology Branch, National Institute of Environmental Health Sciences (NIH/ NIEHS), Durham, NC, USA; Department of Health Registries, Norwegian Institute of Public Health, Oslo, Norway
Haplin funding source(s)
Supported by the Bergen Medical Research Foundation, grant 807191; in part by the Intramural Program of the National Institute of Environmental Health Sciences, National Institutes of Health (NIH/ NIEHS); by NIH grant DE08559; and partly by the Research Council of Norway, project number 262700.

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