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Mitochondrial DNA haplogroup detection software tools | Phylogenomics

The determination of human mitochondrial DNA (mtDNA) haplogroups is not only crucial in anthropological and forensic studies, but is also helpful in the medical field to prevent establishment of wrong disease associations. In recent years,…
Phy-Mer
Desktop

Phy-Mer

A mitochondrial genome haplogroup-defining algorithm using a k-mer approach.…

A mitochondrial genome haplogroup-defining algorithm using a k-mer approach. Phy-Mer performs equally well as the leading haplogroup classifier, HaploGrep, while avoiding the errors that may occur…

HaploGrep
Web
Desktop

HaploGrep

Identifies haplogroups by traversing the underlying phylogenetic tree…

Identifies haplogroups by traversing the underlying phylogenetic tree Phylotree. HaploGrep is able to support high quality mitochondrial DNA (mtDNA) research projects with a profound quality control…

HmtDB
Dataset

HmtDB Human Mitochondrial Database

Supports population genetics and mitochondrial disease studies. HmtDB hosts…

Supports population genetics and mitochondrial disease studies. HmtDB hosts human mitochondrial genome sequences annotated with population and variability data, the latter being estimated through the…

MitoTool
Web

MitoTool

Provides a convenient, user-friendly interface for handling human mtDNA…

Provides a convenient, user-friendly interface for handling human mtDNA sequence data. It contains multiple modules which cover a wide array of functions: (i) to automatically yield a list of the…

HAPLOFIND
Web

HAPLOFIND

A pipeline based on previous algorithms, inherited from the "nuclear…

A pipeline based on previous algorithms, inherited from the "nuclear genomic toolbox," combined with a developed algorithm capable of efficiently and easily classify new mtDNA sequences…

mtDNAoffice
Desktop

mtDNAoffice

A fast, automated process to determine distances between mtDNA sequences…

A fast, automated process to determine distances between mtDNA sequences allowing their subsequent clustering and haplogroup assignment that may increase the speed of data analysis and avoid human…

H-mito
Desktop

H-mito

A mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree.

A mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree.

MitoVariome
Dataset

MitoVariome

A freely accessible web application and database that enables human…

A freely accessible web application and database that enables human mitochondrial genome researchers to study genetic variation in mitochondrial genome with textual and graphical views accompanied by…

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