HaploRec statistics

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Associated diseases

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HaploRec specifications

Information


Unique identifier OMICS_11046
Name HaploRec
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 2.3
Stability Stable
Requirements
Java
Maintained Yes

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Maintainer


  • person_outline Lauri Eronen <>

Publications for HaploRec

HaploRec in publications

 (3)
PMCID: 3355167
PMID: 22615869
DOI: 10.1371/journal.pone.0037003

[…] were obtained using the tukey hsd test., haplotypes were computationally predicted for ungapped genotypic alignments using the programs arlequin version 3.1 (em zipper option) , gerbil , hapinferx , haplorec version 2.3 , and phase version 2.1 . the cvhaplot package version 2.0 was used to generate the input files for each program, as well as calculate the consensus haplotypes from the outputs […]

PMCID: 3446271
PMID: 22429919
DOI: 10.1186/gm320

[…] were present in the phase- known and unphased datasets. these formed a dataset of 60,704 snps for a population of 41 unrelated individuals. the phase-predicted haplotypes were estimated with the haplorec software [] based on the 41 population samples. the 29 samples present in the phase-known and the phase-predicted datasets were selected to test haplous performance, and from these samples […]

PMCID: 1892078
PMID: 17493258
DOI: 10.1186/1471-2105-8-S2-S9

[…] , the idea of using frequent fragments to build markov models for haplotypes has also been used in the haplorec method []. in haplorec, a set of fragments (of any length) that are frequent according to the current model is kept, and updated after each iteration of the em algorithm., the proposed […]


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HaploRec institution(s)
HIIT-BRU, Department of Computer Science, University of Helsinki, Finland; Laboratory for Foundations of Computer Science, University of Edinburgh, UK; Department of Computer Science, University of Freiburg, Germany
HaploRec funding source(s)
This research has been financially supported by the Finnish Funding Agency for Technology and Innovation (Tekes).

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