HaploReg specifications


Unique identifier OMICS_08323
Name HaploReg
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 4.1
Stability Stable
Maintained Yes


  • Animals
    • Homo sapiens

HaploReg articles

HaploReg citations

PMCID: 5172377

[…] versus 18 healthy controls). the genes in closest physical proximity to the lead variant were taken into consideration as potentially causal. (2) eqtl analyses were based on the annotation tool haploreg v4.1, which accounts for the effect of snps on expression from multiple eqtl studies. snps with an ld r2>0.9 and d′>0.9 were also considered., for the heritability analysis, we used […]

PMCID: 4999417

[…] mutated ighv (>90% tumor cell content), also were examined (puente et al., 2015). detailed protocols are available from the blueprint consortium (http://www.blueprint-epigenome.eu). we also used haploreg (ward and kellis, 2012) to examine whether rs539846 or proxy snps (r2 > 0.2 in 1000 genomes eur reference panel) annotate transcription factor-binding sites or enhancer elements. […]

PMCID: 3734129

[…] phase of inrich enrichment analysis and 10,000 in the bootstrap replication phase for correction of multiple testing., information on functional annotation and regulatory features was obtained from haploreg (www.broadinstitute.org/mammals/haploreg/)., table s1 contains demographic characteristics of our analytic groups. there were 21 genes from the 5 tested mapk pathway gene sets containing […]

HaploReg institution(s)
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; The Broad Institute of MIT and Harvard, Cambridge, MA, USA
HaploReg funding source(s)
National Institutes of Health (NIH) [R01-HG004037, RC1-HG005334, R01-HG008155]

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