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HapMuC specifications


Unique identifier OMICS_05379
Name HapMuC
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data A list of candidate somatic mutations.
Operating system Unix/Linux
Programming languages C++, Python, Ruby
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Boost, SAMtools, BEDTools
Maintained Yes




No version available


  • person_outline Seiya Imoto <>

Additional information


Publication for HapMuC

HapMuC citation


A review of somatic single nucleotide variant calling algorithms for next generation sequencing data

PMCID: 5852328
PMID: 29552334
DOI: 10.1016/j.csbj.2018.01.003

[…] strategy) is widely adopted by structural variant callers in which reads need to be assembled to reconstruct long variants. it is also a powerful strategy for snv detection and used by platypus, hapmuc, lochap, freebayes, and mutect2 , , , , . these algorithms locally assemble reads in a region and generate candidate haplotypes that may be represented by de bruijn-like graphs. the likelihood […]

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HapMuC institution(s)
Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan; Department of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan
HapMuC funding source(s)
Partly supported by Grant-in-Aid for Scientific Research on Innovative Areas (22134004).

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