Harvest specifications


Unique identifier OMICS_08468
Name Harvest
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input format GGR,FASTA,VCF
Output data Compressed binary archive
Output format GGR,FASTA,VCF
Operating system Unix/Linux, Mac OS
Programming languages C++, Python, Shell (Bash)
Computer skills Advanced
Version 1.3
Stability Stable
Source code URL https://codeload.github.com/marbl/harvest/zip/v1.1.2
Maintained Yes


  • Gingr
  • HarvestTools
  • Parsnp



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  • person_outline Todd J. Treangen <>

Additional information


Publication for Harvest

Harvest institution(s)
National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA
Harvest funding source(s)
Supported by an Agreement (No. HSHQDC-07-C-00020) awarded by the Department of Homeland Security Science and Technology Directorate (DHS/S&T) for the management and operation of the National Biodefense Analysis and Countermeasures Center (NBACC); and a Federally Funded Research and Development Center.

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