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|Interface||Web user interface|
|Restrictions to use||None|
- Homo sapiens
Publication for hCKSAAP_UbSite
Computational methods for ubiquitination site prediction using physicochemical properties of protein sequences
[…] ediction tool called CKSAAP_UbSite based on the SVM technique and with composition of k-spaced AA pairs as the features . They also developed a human-specific ubiquitination prediction tools, named hCKSAAP_UbSite, which integrates CKSAAP_UbSite with two other SVM classifiers (i.e., the one based on binary amino acid encoding and the one based on the AAindex  physicochemical property encoding) […]
Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin proteasome system
[…] Others) from the same 42-protein set.A large-scale set of experimentally validated Ubsites in human proteins had previously been collected and used to train a human-specific ubiquitin site predictor (hCKSAAP_UbSite). The outcome of ubiquitination was unknown for this set of proteins. This data had been compiled from two recent proteomics-scale assays (in which the Ubsites were assigned based on en […]
Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities
[…] diction performance; 3) the physicochemical properties of residues in the flanking sequences surrounding a Ubi-site are important in the ubiquitination process. For Ubi-site identification in humans, hCKSAAP_UbSite  has utilized amino acid patterns and properties to improve the prediction performance. The area under the receiver operating characteristic (ROC) curve (AUC) was 0.770 and 0.757 for […]
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