hCKSAAP_UbSite statistics

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hCKSAAP_UbSite specifications

Information


Unique identifier OMICS_05549
Name hCKSAAP_UbSite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Taxon


  • Primates
    • Homo sapiens

Publication for hCKSAAP_UbSite

hCKSAAP_UbSite in publications

 (3)
PMCID: 4778322
PMID: 26940649
DOI: 10.1186/s12859-016-0959-z

[…] tool called cksaap_ubsite based on the svm technique and with composition of k-spaced aa pairs as the features []. they also developed a human-specific ubiquitination prediction tools, named hcksaap_ubsite, which integrates cksaap_ubsite with two other svm classifiers (i.e., the one based on binary amino acid encoding and the one based on the aaindex [] physicochemical property encoding) […]

PMCID: 4729826
PMID: 26732515
DOI: 10.1038/ncomms10239

[…] from the same 42-protein set.a large-scale set of experimentally validated ubsites in human proteins had previously been collected and used to train a human-specific ubiquitin site predictor (hcksaap_ubsite). the outcome of ubiquitination was unknown for this set of proteins. this data had been compiled from two recent proteomics-scale assays (in which the ubsites were assigned based […]

PMCID: 4331700
PMID: 25707307
DOI: 10.1186/1471-2105-16-S1-S1

[…] performance; 3) the physicochemical properties of residues in the flanking sequences surrounding a ubi-site are important in the ubiquitination process. for ubi-site identification in humans, hcksaap_ubsite [] has utilized amino acid patterns and properties to improve the prediction performance. the area under the receiver operating characteristic (roc) curve (auc) was 0.770 and 0.757 […]


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hCKSAAP_UbSite institution(s)
State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China

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