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FAST5 file format conversion software tools | Whole-genome sequencing data analysis

The pressing need to explore and manipulate the data generated by the MinION device obliged the MAP community to develop a series of software packages for parsing and converting FAST5 files into more conventional FASTA or FASTQ sequence formats.

G T A T C G C T A
NanoOK
Desktop

NanoOK

Provides comprehensive alignment-based analysis of Nanopore reads through a…

Provides comprehensive alignment-based analysis of Nanopore reads through a simple, easy to use interface. NanoOK generates detailed tabular and graphical output plus an in-depth multi-page PDF…

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poRe
Desktop

poRe

Allows to manipulate, organize, summarize and visualize MinION nanopore…

Allows to manipulate, organize, summarize and visualize MinION nanopore sequencing data. poRe enables users to manipulate MinION FAST5 files into run folders, extract FASTQ, gather statistics on each…

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HPG pore
Desktop

HPG pore

A scalable bioinformatic tool for exploring and analyzing nanopore sequencing…

A scalable bioinformatic tool for exploring and analyzing nanopore sequencing data that can run both individual computers and in the Hadoop distributed computing framework. The Hadoop environment…

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npReader
Desktop

npReader

An open-source software package to facilitate real-time analysis of MinION…

An open-source software package to facilitate real-time analysis of MinION sequencing data. npReader can simultaneously extract sequence reads and stream them to downstream analysis pipelines while…

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poretools
Desktop

poretools

A flexible toolkit for exploring datasets generated by nanopore sequencing…

A flexible toolkit for exploring datasets generated by nanopore sequencing devices from MinION for the purposes of quality control and downstream analysis. Poretools operates directly on the native…

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