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Heatmap creation software tools | Gene expression data analysis

Thanks to rapid developments in data rendering and visualization software, heat maps have become increasingly popular routes to display information-rich data in both two and three dimensions. The concept of a heat map appears to have emerged from…
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HemI
Desktop

HemI Heat map Illustrator

Allows to visualize gene or protein expression data in heatmaps. HemI linearly…

Allows to visualize gene or protein expression data in heatmaps. HemI linearly normalizes gene or protein expression data. It allows users to draw, manipulate and export publication-quality heatmaps…

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Heatmapper
Web
Desktop

Heatmapper

Allows users to interactively visualize their data in the form of heat maps.…

Allows users to interactively visualize their data in the form of heat maps. Heatmapper is designed to be easily used and easily understood by both specialists and non-specialists, alike. Through its…

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Heatmaply
Desktop

Heatmaply

Permits users to constructs interactive cluster heatmaps. Heatmaply allows user…

Permits users to constructs interactive cluster heatmaps. Heatmaply allows user to tune important statistical and visual parameters. It can guide the researcher with the heatmap construction, with…

RJSplot
Desktop

RJSplot

Generates interactive graphs in R. RJSplot contributes to the development of…

Generates interactive graphs in R. RJSplot contributes to the development of interactive visualization packages in R oriented toward computational biology research. The software implements 16…

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Gitools
Web

Gitools

A framework for analysis and visualization of multidimensional genomic data…

A framework for analysis and visualization of multidimensional genomic data using interactive heat-maps.

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HeatMapWrapper
Desktop

HeatMapWrapper

Allows a set of descriptor contributions, associated with binary descriptors…

Allows a set of descriptor contributions, associated with binary descriptors corresponding to fingerprints. HeatMapWrapper is an application that allows chemically and biologically meaningful…

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Shinyheatmap
Web
Desktop

Shinyheatmap

Creates customizable static and interactive heatmaps. Shinyheatmap is a low…

Creates customizable static and interactive heatmaps. Shinyheatmap is a low memory footprint program, making it particularly well-suited for the interactive visualization of extremely large datasets…

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Complex…
Desktop

Complex heatmaps

A package that provides rich functionalities for customizing heatmaps,…

A package that provides rich functionalities for customizing heatmaps, arranging multiple parallel heatmaps and including user-defined annotation graphics. ComplexHeatmap reveals patterns and…

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deepTools
Desktop
Web

deepTools

A Galaxy based web server for processing and visualizing deeply sequenced data.…

A Galaxy based web server for processing and visualizing deeply sequenced data. The web server's core functionality consists of a suite of newly developed tools, called deepTools, that enable…

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NG-CHM Viewer
Desktop

NG-CHM Viewer Next-Generation Clustered HeatMaps Viewer

Allows users to build and view next-generation clustered heat maps (NG-CHMs).…

Allows users to build and view next-generation clustered heat maps (NG-CHMs). NG-CHM Viewer is a standalone that assists users in their exploratory researches on mRNA expression (RNA sequencing…

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SaVanT
Web

SaVanT SignAture VisuaAlizatioN Tool

Allows visualization of signatures in user-generated expression profiles.…

Allows visualization of signatures in user-generated expression profiles. SaVanT was constructed on a basis of 636 generated signatures from expression dataset collections that were supplemented with…

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HaemAtlas
Web

HaemAtlas

Makes a heatmap of a list of genes. HaemAtlas is a gene expression atlas for 8…

Makes a heatmap of a list of genes. HaemAtlas is a gene expression atlas for 8 cells of the hematopoietic system what represents the most comprehensive study of gene expression in blood cells from…

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PermutMatrix
Desktop

PermutMatrix

A work space to graphically explore gene expression data. PermutMatrix uses the…

A work space to graphically explore gene expression data. PermutMatrix uses the graphical Eisen approach, and extends it to optimal reorganization methods. It can also offer several methods for the…

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InCHlib
Web

InCHlib Interactive Cluster Heatmap library

Facilitates the visualization, exploration and easy web integration of cluster…

Facilitates the visualization, exploration and easy web integration of cluster heatmaps for web applications. InCHlib is an interactive tool that enables the user to select heatmap rows, to zoom in…

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gplots
Desktop

gplots

Allows users to plot data. gplots gathers a wide range of functionalities which…

Allows users to plot data. gplots gathers a wide range of functionalities which permit, for instance, to calculate and plot locally summary function, manipulate colors, display Open Office style…

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shinyHeatmaply
Desktop

shinyHeatmaply

Saves to disk a self-contained copy of the htmlwidget as an html file with data…

Saves to disk a self-contained copy of the htmlwidget as an html file with data and specifications set from the user interface (UI). shinyHeatmaply is a shiny application and shiny gadget for the…

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ChromHeatMap
Desktop

ChromHeatMap

Plots genome-wide data (e.g. expression, CGH, SNP) along each strand of a given…

Plots genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The ChromHeatMap package provides functions for visualising expression data in a genomic…

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pairheatmap
Desktop

pairheatmap

A tool to compare two heatmaps and discover patterns within and across groups.

A tool to compare two heatmaps and discover patterns within and across groups.

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HeatmapGenerato…
Desktop

HeatmapGenerator

A software package to create customized gene expression heatmaps from RNA-seq…

A software package to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other…

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HeatMapViewer
Desktop

HeatMapViewer

A BioJS component that lays-out and renders two-dimensional (2D) plots or heat…

A BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray…

Pathline
Desktop

Pathline

Permits interactive visualization that shows time series data for both gene…

Permits interactive visualization that shows time series data for both gene activity and metabolite levels over multiple pathways and multiple species. Pathline supports the visual analysis of all…

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Iheatmapr
Desktop

Iheatmapr Interactive Heat Map

Creates an interactive heatmap, with each cell linked to plots of horizontal…

Creates an interactive heatmap, with each cell linked to plots of horizontal and vertical slices. Iheatmapr is an R package for building complex, interactive heatmaps using modular building blocks.…

Qlucore Omics…
Desktop

Qlucore Omics Explorer

Provides bioinformatics products to support the user with visual analysis of…

Provides bioinformatics products to support the user with visual analysis of measured data taking into account publicly available information such as gene ontologies, pathways and other system…

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