HeatMapper statistics

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Associated diseases

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HeatMapper specifications

Information


Unique identifier OMICS_26971
Name HeatMapper
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format CSV, TSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Database management system MySQL
Computer skills Advanced
Stability Stable
Maintained No

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Publication for HeatMapper

HeatMapper in publications

 (47)
PMCID: 5906561
PMID: 29670257
DOI: 10.1038/s41598-018-24421-z

[…] the heat maps, clustvis online software was used. the statistical correlation analysis function was performed using ncss software. pairwise matrix of correlation values was generated using heatmapper software. all experiments were carried out in duplicates, and the results are presented as mean., sequences of the primers are proprietary. array plate designing was done in accordance […]

PMCID: 5876643
PMID: 29518944
DOI: 10.3390/cancers10030068

[…] the above results of expression profiles of proteins through microarray analyses (, ) which is consistent with real time and western blot studies (, , and ). the heat maps were generated using heatmapper software (university of alberta, edmonton, ab, canada) []. these results reflected that activation of the er stress (perk and ire1α) signaling pathway could directly or indirectly […]

PMCID: 5873900
PMID: 29432129
DOI: 10.1534/g3.117.300504

[…] of interest were generated using deeptools (version 2.2.4 () with the computematrix function using a binsize of 10bp using the bigwig files generated above. these were further processed using the heatmapper module of deeptools or using ggplot2 in r (version 3.2.2)., for gene expression analysis, we used our previous rna-seq data in hepg2 cells (). expression analysis was carried out on single […]

PMCID: 5877558
PMID: 29494488
DOI: 10.3390/ijms19030697

[…] groups were obtained using the wald test of the sleuth method [] with a b ratio (bias) higher than 1 and a q-value (false positive probability) lower than 0.01. heat map was created using the heatmapper web tool (available online: http://www.heatmapper.ca/). gene enrichment analyses were performed with the fischer’s exact test using topgo package in r (available online: […]

PMCID: 5805780
PMID: 29422610
DOI: 10.1038/s41598-018-20999-6

[…] treatments were selected by comparing the categories to each other (control vs. uvb, control vs. tsa, control vs. uvb + tsa and uvb vs. uvb + tsa). a heat map including these genes was generated by heatmapper online software using an average linkage algorithm with the elucleidean distance method for clustering. the microarray data have been deposited in the arrayexpress database at embl-ebi […]


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HeatMapper institution(s)
Department of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands; Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, The Netherlands
HeatMapper funding source(s)
Supported by grants from the Erasmus University Medical Center (Revolving Fund) and the Dutch Cancer Society "Koningin Wilhelmina Fonds".

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