Heatmapper pipeline

Heatmapper specifications

Information


Unique identifier OMICS_12077
Name Heatmapper
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline David Wishart <>

Information


Unique identifier OMICS_12077
Name Heatmapper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline David Wishart <>

Publication for Heatmapper

Heatmapper IN pipeline

2018
PMCID: 5840357
PMID: 29511172
DOI: 10.1038/s41419-018-0411-6

[…] the genes, of which expression fold changes are >2 or <0.5, and adjusted pā€‰<ā€‰0.05 were selected as the rbko-related degs. totally 677 degs were identified. the heatmap was generated using heatmapper55. the function enrichment of deg was performed using enrichr33,34, the pathways with adjusted pā€‰<ā€‰0.05 were chosen to report., total rna was isolated from dissected peripheral retina […]

Heatmapper institution(s)
Department of Computing Science, University of Alberta, Edmonton, AB, Canada; Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada; National Institute for Nanotechnology, Edmonton, AB, Canada
Heatmapper funding source(s)
Supported by the Canadian Institutes of Health Research and Genome Alberta.

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