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Heatmapper

Allows users to interactively visualize their data in the form of heat maps. Heatmapper is designed to be easily used and easily understood by both specialists and non-specialists, alike. Through its intuitive graphical user interface and a large number of example files, Heatmapper allows users to quickly create a wide variety of heat maps for many different data types. These include: (i) pairwise distance maps; (ii) correlation matrices; (iii) image overlay heat maps; (iv) latitude and longitude heat maps; (v) geopolitical (choropleth) heat maps and (vi) expression-based heat maps from transcriptomic, proteomic and metabolomic experiments. Heatmapper offers a number of simple and intuitive customization options for facile adjustments to each heat map's appearance and interactive querying of each heat map's numerical data content. Heat map data can be easily uploaded to Heatmapper in text, Excel or tab delimited formatted tables and the resulting heat map images can be easily downloaded in common formats including PNG, JPG and PDF.

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Heatmapper forum

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Heatmapper classification

Heatmapper specifications

Interface:
Web user interface
Programming languages:
R
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

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No review has been posted.

Heatmapper forum

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No open topic.

Heatmapper versioning

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Heatmapper classification

Heatmapper specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Source code URL:
https://github.com/sbabicki/heatmapper
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Maintained:
Yes

Heatmapper support

Documentation

Maintainer

  • David Wishart <>
  • David Wishart <>

Credits

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Publications

Institution(s)

Department of Computing Science, University of Alberta, Edmonton, Canada; Department of Biological Sciences, University of Alberta, Edmonton, Canada; National Institute for Nanotechnology, Edmonton, Canada

Funding source(s)

Canadian Institutes of Health Research (CIHR); Genome Alberta, a division of Genome Canada

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