Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Helix-helix interaction detection software tools | Protein structure data analysis

Helix-helix interactions are crucial in the structure assembly, stability and function of helix-rich proteins including many membrane proteins.Source text:(Xiong et al., 2017) Predicting the helix-helix interactions from correlated residue…
HHConPred
Desktop

HHConPred

Identifies interactions from predicted residue contact maps. HHConPred is a…

Identifies interactions from predicted residue contact maps. HHConPred is a method that permits a reliable prediction of helix-helix interactions in both soluble and membrane proteins given the noisy…

TMHcon
Desktop

TMHcon

Predicts helix-helix contacts specifically within the transmembrane parts of…

Predicts helix-helix contacts specifically within the transmembrane parts of membrane proteins. TMHcon is a neural-network based approach. It integrates sequence profiles, correlated mutations,…

TMhhcp
Web

TMhhcp

Predicts residue-residue contacts in alpha-helix transmembrane (TM) proteins.…

Predicts residue-residue contacts in alpha-helix transmembrane (TM) proteins. TMhhcp is a random forest (RF) algorithm that can be used as a valuable tool for predicting the structural properties of…

MemConP
Desktop

MemConP Membrane Contact Prediction

A contact prediction method for α-helical transmembrane proteins, in which…

A contact prediction method for α-helical transmembrane proteins, in which evolutionary couplings are combined with a machine learning approach. MemConP achieves a substantially improved accuracy…

MemBrain
Web

MemBrain

A method to derive transmembrane inter-helix contacts from amino acid sequences…

A method to derive transmembrane inter-helix contacts from amino acid sequences by combining correlated mutations and multiple machine learning classifiers. Tested on 60 non-redundant polytopic…

TMhit
Web

TMhit TM helix– helix interaction prediction

Predicts transmembrane (TM) interhelical residue contacts. TMhit is a method…

Predicts transmembrane (TM) interhelical residue contacts. TMhit is a method based on a hierarchical architecture with two levels via support vector machines (SVMs) classifiers. It estimates the…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.