HemeNet specifications

Information


Unique identifier OMICS_25943
Name HemeNet
Interface Web user interface
Restrictions to use None
Input data A chain ATOM.
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jianjun Hu

Publication for HemeNet

HemeNet citation

library_books

SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides

2014
BMC Bioinformatics
PMCID: 4290654
PMID: 25522279
DOI: 10.1186/1471-2105-15-S16-S4

[…] ] is an SVM-based ensemble predictor that uses two feature sets position specific scoring matrices (PSSM) and structural information (comprising solvent accessibility, depth, and a protrusion index). HemeNET [] uses topological properties of binding residues from the 3D interaction networks to improve its predictive performance. Xiong et al. [] and TargetS [] proposed sequence-based prediction met […]

HemeNet institution(s)
Department of Computer Science and Engineering, University of South Carolina, Columbia, SC, USA
HemeNet funding source(s)
Supported by the National Science Foundation Career Award (Grant BIO-DBI-0845381).

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