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HexServer specifications

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Unique identifier OMICS_03776
Name HexServer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for HexServer

HexServer citations

 (12)
library_books

Mechanism of Apoptosis Induction by Mycoplasmal Nuclease MGA_0676 in Chicken Embryo Fibroblasts

2018
PMCID: 5893762
PMID: 29670864
DOI: 10.3389/fcimb.2018.00105

[…] (http://espript.ibcp.fr/espript/cgi-bin/espript.cgi) and homology remodeling tools (http://swissmodel.expasy.org/workspace/index). prediction of the interactions between proteins was done using the hexserver tool (http://hexserver.loria.fr/). software programs, such as dnastar, dnaman, and primer premier 5, were also used in the analyses., recombinant his-tag mga_0676 (rmga_0676) […]

library_books

Predictive and Experimental Approaches for Elucidating Protein–Protein Interactions and Quaternary Structures

2017
Int J Mol Sci
PMCID: 5751226
PMID: 29206185
DOI: 10.3390/ijms18122623

[…] are very common and include gramm-x which extends the original gramm fft method by employing smoothed potentials, refinement stage, and knowledge-based scoring []. the hex protein docking server (hexserver) is an fft based protein-docking server that utilizes graphics processing unit (gpu) acceleration. by using multiple gpus, a typical docking run takes approximately 15 s, which is up to two […]

library_books

Movement Protein of Cucumber Mosaic Virus Associates with Apoplastic Ascorbate Oxidase

2016
PLoS One
PMCID: 5036820
PMID: 27668429
DOI: 10.1371/journal.pone.0163320

[…] the quality of the 3d-model of mp was evaluated using procheck tool at savs server (http://nihserver.mbi.ucla.edu/saves/). docking was performed using the hexserver (http://hexserver.loria.fr.). csao4 and mp were uploaded as inputs into hex and treated as receptor and ligand, respectively. molecular interactions between proteins were predicted using […]

library_books

Screening for protein protein interactions using Förster resonance energy transfer (FRET) and fluorescence lifetime imaging microscopy (FLIM)

2016
Sci Rep
PMCID: 4919659
PMID: 27339025
DOI: 10.1038/srep28186

[…] error bars are the standard deviations, p-values were calculated using the student’s t-test and indicated as follows: p ≤ 0.05 (*), p ≤ 0.01 (**) and p ≤ 0.001 (***)., docking programs hex (http://hexserver.loria.fr/index.php) and cluspro (http://nrc.bu.edu/cluster) were used for rigid body docking and to run simulations of the heterodimers consisting of the monomer structures of mst1 (pdb: […]

library_books

Novel Immunomodulatory Flagellin Like Protein FlaC in Campylobacter jejuni and Other Campylobacterales

2015
PMCID: 4863622
PMID: 27303676
DOI: 10.1128/mSphere.00028-15

[…] bound to the affinity beads in the absence of flac. modeling the structure of the tlr5-flac heterotetramer according to the recently published tlr5 ectodomain crystal structure () using hexdock (hexserver) () proposed a thermodynamically favorable interaction interface between the two proteins, specifically at the flac d1 domain (). the modeled tlr5-flac heterotetramer arrangement […]

library_books

α Mangostin Disrupts the Development of Streptococcus mutans Biofilms and Facilitates Its Mechanical Removal

2014
PLoS One
PMCID: 4211880
PMID: 25350668
DOI: 10.1371/journal.pone.0111312

[…] (http://www.ncbi.nlm.nih.gov/pccompound). marvinsketch software was utilized for obtaining the α-mangostin structure in a pdb format (http://www.chemaxon.com/products/marvin/marvinsketch/), and the hexserver (hex 6.9 software) was accessed for calculating and displaying protein-ligand docking (http://hexserver.loria.fr/). the parameters used for docking included: correlation type (shape only), […]


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HexServer institution(s)
Department of Computing Science, Lillybank Gardens, University of Glasgow, Scotland, UK

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