HexServer statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Protein-protein docking chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

HexServer specifications

Information


Unique identifier OMICS_03776
Name HexServer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for HexServer

HexServer in publications

 (12)
PMCID: 5893762
PMID: 29670864
DOI: 10.3389/fcimb.2018.00105

[…] (http://espript.ibcp.fr/espript/cgi-bin/espript.cgi) and homology remodeling tools (http://swissmodel.expasy.org/workspace/index). prediction of the interactions between proteins was done using the hexserver tool (http://hexserver.loria.fr/). software programs, such as dnastar, dnaman, and primer premier 5, were also used in the analyses., recombinant his-tag mga_0676 (rmga_0676) […]

PMCID: 5751226
PMID: 29206185
DOI: 10.3390/ijms18122623

[…] are very common and include gramm-x which extends the original gramm fft method by employing smoothed potentials, refinement stage, and knowledge-based scoring []. the hex protein docking server (hexserver) is an fft based protein-docking server that utilizes graphics processing unit (gpu) acceleration. by using multiple gpus, a typical docking run takes approximately 15 s, which is up to two […]

PMCID: 5036820
PMID: 27668429
DOI: 10.1371/journal.pone.0163320

[…] the quality of the 3d-model of mp was evaluated using procheck tool at savs server (http://nihserver.mbi.ucla.edu/saves/). docking was performed using the hexserver (http://hexserver.loria.fr.). csao4 and mp were uploaded as inputs into hex and treated as receptor and ligand, respectively. molecular interactions between proteins were predicted using […]

PMCID: 4919659
PMID: 27339025
DOI: 10.1038/srep28186

[…] error bars are the standard deviations, p-values were calculated using the student’s t-test and indicated as follows: p ≤ 0.05 (*), p ≤ 0.01 (**) and p ≤ 0.001 (***)., docking programs hex (http://hexserver.loria.fr/index.php) and cluspro (http://nrc.bu.edu/cluster) were used for rigid body docking and to run simulations of the heterodimers consisting of the monomer structures of mst1 (pdb: […]

PMCID: 4863622
PMID: 27303676
DOI: 10.1128/mSphere.00028-15

[…] bound to the affinity beads in the absence of flac. modeling the structure of the tlr5-flac heterotetramer according to the recently published tlr5 ectodomain crystal structure () using hexdock (hexserver) () proposed a thermodynamically favorable interaction interface between the two proteins, specifically at the flac d1 domain (). the modeled tlr5-flac heterotetramer arrangement […]


To access a full list of publications, you will need to upgrade to our premium service.

HexServer institution(s)
Department of Computing Science, Lillybank Gardens, University of Glasgow, Scotland, UK

HexServer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review HexServer