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HexServer specifications


Unique identifier OMICS_03776
Name HexServer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for HexServer

HexServer citations


Mechanism of Apoptosis Induction by Mycoplasmal Nuclease MGA_0676 in Chicken Embryo Fibroblasts

PMCID: 5893762
PMID: 29670864
DOI: 10.3389/fcimb.2018.00105

[…] (http://espript.ibcp.fr/espript/cgi-bin/espript.cgi) and homology remodeling tools (http://swissmodel.expasy.org/workspace/index). prediction of the interactions between proteins was done using the hexserver tool (http://hexserver.loria.fr/). software programs, such as dnastar, dnaman, and primer premier 5, were also used in the analyses., recombinant his-tag mga_0676 (rmga_0676) […]


Predictive and Experimental Approaches for Elucidating Protein–Protein Interactions and Quaternary Structures

Int J Mol Sci
PMCID: 5751226
PMID: 29206185
DOI: 10.3390/ijms18122623

[…] are very common and include gramm-x which extends the original gramm fft method by employing smoothed potentials, refinement stage, and knowledge-based scoring []. the hex protein docking server (hexserver) is an fft based protein-docking server that utilizes graphics processing unit (gpu) acceleration. by using multiple gpus, a typical docking run takes approximately 15 s, which is up to two […]


Movement Protein of Cucumber Mosaic Virus Associates with Apoplastic Ascorbate Oxidase

PLoS One
PMCID: 5036820
PMID: 27668429
DOI: 10.1371/journal.pone.0163320

[…] the quality of the 3d-model of mp was evaluated using procheck tool at savs server (http://nihserver.mbi.ucla.edu/saves/). docking was performed using the hexserver (http://hexserver.loria.fr.). csao4 and mp were uploaded as inputs into hex and treated as receptor and ligand, respectively. molecular interactions between proteins were predicted using […]


Screening for protein protein interactions using Förster resonance energy transfer (FRET) and fluorescence lifetime imaging microscopy (FLIM)

Sci Rep
PMCID: 4919659
PMID: 27339025
DOI: 10.1038/srep28186

[…] error bars are the standard deviations, p-values were calculated using the student’s t-test and indicated as follows: p ≤ 0.05 (*), p ≤ 0.01 (**) and p ≤ 0.001 (***)., docking programs hex (http://hexserver.loria.fr/index.php) and cluspro (http://nrc.bu.edu/cluster) were used for rigid body docking and to run simulations of the heterodimers consisting of the monomer structures of mst1 (pdb: […]


Novel Immunomodulatory Flagellin Like Protein FlaC in Campylobacter jejuni and Other Campylobacterales

PMCID: 4863622
PMID: 27303676
DOI: 10.1128/mSphere.00028-15

[…] bound to the affinity beads in the absence of flac. modeling the structure of the tlr5-flac heterotetramer according to the recently published tlr5 ectodomain crystal structure () using hexdock (hexserver) () proposed a thermodynamically favorable interaction interface between the two proteins, specifically at the flac d1 domain (). the modeled tlr5-flac heterotetramer arrangement […]


α Mangostin Disrupts the Development of Streptococcus mutans Biofilms and Facilitates Its Mechanical Removal

PLoS One
PMCID: 4211880
PMID: 25350668
DOI: 10.1371/journal.pone.0111312

[…] (http://www.ncbi.nlm.nih.gov/pccompound). marvinsketch software was utilized for obtaining the α-mangostin structure in a pdb format (http://www.chemaxon.com/products/marvin/marvinsketch/), and the hexserver (hex 6.9 software) was accessed for calculating and displaying protein-ligand docking (http://hexserver.loria.fr/). the parameters used for docking included: correlation type (shape only), […]

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HexServer institution(s)
Department of Computing Science, Lillybank Gardens, University of Glasgow, Scotland, UK

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