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Protocols

HGD specifications

Information


Unique identifier OMICS_03130
Name HGD
Alternative name Hymenoptera Genome Database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Hymenoptera_genome_database

Maintainer


  • person_outline Christine G. Elsik

Publications for Hymenoptera Genome Database

HGD citations

 (11)
library_books

Species specific genes under selection characterize the co evolution of slavemaker and host lifestyles

2017
BMC Evol Biol
PMCID: 5715652
PMID: 29202686
DOI: 10.1186/s12862-017-1078-9

[…] We chose the myrmicine ant Acromyrmex echinator to include as outgroup, for which we observed the highest Blast similarity in our contig Blast searches. A. echinator sequences were obtained from the “Hymenoptera Genome Database” [; aech_OGSv3.8_pep.fa]. We inferred orthology between T. curvispinosus and Acromyrmex echinator applying a local BLASTn []. The according sequences for each cluster were […]

library_books

Differential Properties of Venom Peptides and Proteins in Solitary vs. Social Hunting Wasps

2016
Toxins
PMCID: 4773785
PMID: 26805885
DOI: 10.3390/toxins8020032

[…] nom peptides, including those rarely detected by proteomic analysis []. While an increasing body of genomic or transcriptomic information on wasp venom toxins has become available to date through the Hymenoptera Genome Database [], the information on solitary wasp venom is relatively more limited as compared with that on social wasp. This situation highlights the importance of establishing the ven […]

library_books

The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection

2015
Nucleic Acids Res
PMCID: 4702933
PMID: 26740669
DOI: 10.1093/nar/gkv1356

[…] tion of genome resources for human and model organisms (Ensembl, RefSeq, UCSC Genome Browser, ENCODE portal), including yeast (SGD), C. elegans (WormBase), Drosophila (FlyBase), ants, bees and wasps (Hymenoptera Genome Database), cow and mouse. The new arrivals include a collection of insect genome resources and genome databases of planaria and ascidians (–). A very interesting Deciphering the Mec […]

library_books

The genomes of two key bumblebee species with primitive eusocial organization

2015
Genome Biol
PMCID: 4414376
PMID: 25908251
DOI: 10.1186/s13059-015-0623-3

[…] ed species: Pediculus humanus PhumU1.2 and A. gambiae AgamP3.6 from VectorBase; N. vitripennis Nvit_OGSv2.0, A. mellifera Amel_OGSv3.2, A. cephalotes Acep_OGSv1.2, and A. echinatior Aech_OGSv3.8 from Hymenoptera Genome Database; B. impatiens Bimp_RefSeq, B. terrestris Bter_RefSeq, and A. florea Aflor_Augustus from NCBI; T. castaneum Tcas_3.0 from BeetleBase; B. mori Bmor_GLEAN from SilkDB; and D. […]

call_split

Phylogenetic Analyses and Characterization of RNase X25 from Drosophila melanogaster Suggest a Conserved Housekeeping Role and Additional Functions for RNase T2 Enzymes in Protostomes

2014
PLoS One
PMCID: 4136927
PMID: 25133712
DOI: 10.1371/journal.pone.0105444
call_split See protocol

[…] proteins was done by BLAST searches using Ensembl Genomes , VectorBase , the Genome Portal of the Department of Energy Joint Genome Institute , the Clonorchis sinensis Genome Database , SmedGD , the Hymenoptera Genome Database , SilkDB , Beetle Base , GeneDB , AphidBase , and the National Center for Biotechnology Information Map Viewer (http://www.ncbi.nlm.nih.gov/projects/mapview/).Protein seque […]

library_books

Patterns of Positive Selection in Seven Ant Genomes

2014
Mol Biol Evol
PMCID: 4069625
PMID: 24782441
DOI: 10.1093/molbev/msu141

[…] Protein-coding gene sequences of the seven ant genomes were downloaded from the Hymenoptera Genome Database (http://hymenopteragenome.org/ant_genomes/, last accessed April 24, 2014) ().The complete annotated gene sets were OGS_1.0 for Acromyrmex echinatior (), OGS_1.2 for Atta ce […]

Citations

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HGD institution(s)
Division of Animal Sciences, University of Missouri, Columbia, MO, USA; Division of Plant Sciences, University of Missouri, Columbia, MO, USA; MU Informatics Institute, University of Missouri, Columbia, MO, USA
HGD funding source(s)
Supported by USDA National Institute of Food and Agriculture - Agriculture and Food Research Initiative [2010–65106–20634, 2010–65106–21301]; the University of Missouri.

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