hgu133plus2.db statistics

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Protocols

hgu133plus2.db specifications

Information


Unique identifier OMICS_26770
Name hgu133plus2.db
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Version 3.2.3
Requirements
AnnotationDbi, methods, RUnit, annotate, DBI, R(>=2.7.0), AnnotationDbi(>=1.34.3), org.Hs.eg.db(>=3.3.0)
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


hgu133plus2.db citations

 (21)
library_books

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification

2018
F1000Res
PMCID: 5820610
PMID: 29527288
DOI: 10.5256/f1000research.11813.r24330

[…] In this case, the cell files were read into R (v3.2.2) using the ‘affy’ package (v1.50.0). Data was normalized using the RMA (Robust multichip averaging) and gene annotation data was added using the hgu133plus2.db package (v3.2.3).GSE records containing data generated with different or multiple platforms have been split by platform using the import process of GXB. GSEs containing data from both c […]

library_books

R Script Approach to Infer Toxoplasma Infection Mechanisms From Microarrays and Domain Domain Protein Interactions

2017
Bioinform Biol Insights
PMCID: 5753922
PMID: 29317802
DOI: 10.1177/1177932217747256

[…] om step 1 are mapped to the database “ToxoDB release 26” (www.toxodb.org).Step 3. The host ID probe sets obtained from both functions (in Step 1) are mapped to gene symbols and Pfam entries using the hgu133plus2.db and mouse4302.db packages., We also included a collection of human illumina IDs to map into gene symbol. This list is included in Additional file 1.Step 4. Subsequently, functional enri […]

library_books

Integrative analysis of genome wide gene copy number changes and gene expression in non small cell lung cancer

2017
PLoS One
PMCID: 5675410
PMID: 29112949
DOI: 10.1371/journal.pone.0187246

[…] r each of the 54675 probe sets included on the Affymetrix HG U133 Plus 2.0 array was assigned to its respective chromosomal position and matched to corresponding segmented CN estimate. The R package ‘hgu133plus2.db’ [] provided information about chromosome number and start-stop positions for the individual probes that constitute a probe set. Probe sets with missing or ambiguous information of geno […]

library_books

Multidimensional pooled shRNA screens in human THP 1 cells identify candidate modulators of macrophage polarization

2017
PLoS One
PMCID: 5570424
PMID: 28837623
DOI: 10.1371/journal.pone.0183679

[…] son, differentially expressed genes were defined as those exhibiting an absolute FC ≥ 1.5 and p-value < 0.05. Annotation data for probes was obtained using the Bioconductor packages AnnotationDbi and hgu133plus2.db. […]

library_books

Macrophages confer survival signals via CCR1 dependent translational MCL 1 induction in chronic lymphocytic leukemia

2017
Oncogene
PMCID: 5584520
PMID: 28192408
DOI: 10.1038/onc.2016.515

[…] re corrected for multiple testing using the Benjamini–Hochberg false discovery rate. Corrected P-values ⩽0.05 were considered statistically significant. Probes were reannotated using the Bioconductor hgu133plus2.db package. Data were visualized using the ggplot2 package (https://cran.r-project.org/). To identify upstream regulators, these differentially regulated genes were used for an Ingenuity p […]

library_books

Discovery of a Novel Immune Gene Signature with Profound Prognostic Value in Colorectal Cancer: A Model of Cooperativity Disorientation Created in the Process from Development to Cancer

2015
PLoS One
PMCID: 4556644
PMID: 26325386
DOI: 10.1371/journal.pone.0137171

[…] on package “org.Hs.eg.db” (Version 2.8.0) was used to retrieve immune-related genes []. Mappings between Affymetrix probes and Entrez gene identifiers were carried out using the Bioconductor package “hgu133plus2.db”. Meta-analysis was conducted with the R package “meta”, and forest plots were made using the R package “rmeta”. Network visualization was performed in Cytoscape (Version 3.2.0) []. […]

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