HHsenser pipeline

HHsenser specifications

Information


Unique identifier OMICS_13611
Name HHsenser
Interface Web user interface
Restrictions to use None
Input data HHsenser takes a single query sequence or a multiple alignment as input.
Input format FASTA, CRUSTAL, Stockholm, A2M, A3M, EMBL, MEGA, GCG/MSF, PIR/NBRF, TREECON
Output data Returns two multiple alignments, a strict alignment and a permissive one.
Computer skills Basic
Stability No
Maintained No

Documentation


Maintainer


This tool is not available anymore.

Publication for HHsenser

HHsenser IN pipeline

2017
PMCID: 5344682
PMID: 28238653
DOI: 10.1016/j.molcel.2017.01.026

[…] and schmidt, 2014). reference alignments for mukb, mksb and rad50 were similarly constructed using sequences of the respective dimerization domains. then, the alignments were used as queries for hhsenser searches (söding et al., 2006). the resulting sequence sets were filtered with psi-blast for members containing significant homology to reference msas of n-terminal head (headn) […]

HHsenser institution(s)
Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, Tubingen, Germany

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