SALSA specifications

Unique identifier:
OMICS_13412
Alternative name:
SALSA2
Interface:
Command line interface
Input data:
Hi-C data
Output format:
FASTA
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
Simple AssembLy ScAffolder
Software type:
Package/Module
Restrictions to use:
None
Output data:
Final scaffolds
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
SAMtools, Bedtools, pbcore, Networkx

versioning

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SALSA distribution

download

SALSA support

Documentation

Maintainers

  • Adam Phillippy <>
  • Chen-Shan Chin <>

forum

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Publications

Institution(s)

Department of Computer Science, University of Maryland, College Park, MD, USA; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA; Arima Genomics, Inc, San Diego, CA, USA

Funding source(s)

Supported by NHGRI (grant# 1R44HG009584), NIH grant R01-AI100947, the Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health, and the Korean Visiting Scientist Training Award (KVSTA) (grant number: HI17C2098).

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