SALSA specifications

Information


Unique identifier OMICS_13412
Name Simple AssembLy ScAffolder
Alternative name SALSA2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Hi-C data
Output data Final scaffolds
Output format FASTA
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements SAMtools, Bedtools, pbcore, Networkx
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Adam Phillippy <>
  • person_outline Chen-Shan Chin <>

SALSA articles

SALSA institution(s)
Department of Computer Science, University of Maryland, College Park, MD, USA; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA; Arima Genomics, Inc, San Diego, CA, USA
SALSA funding source(s)
Supported by NHGRI (grant# 1R44HG009584), NIH grant R01-AI100947, the Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health, and the Korean Visiting Scientist Training Award (KVSTA) (grant number: HI17C2098).

SALSA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SALSA

Related Tools