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Hi-C User Pipeline HiCUP

A tool for mapping and performing quality control on Hi-C data. HiCUP is designed to take the raw sequence output from a HiC experiment and produce a filtered set of mapped interaction pairs, suitable for subsequent analysis. It will also produce a set of metrics which can be used to assess the quality of the data and help improve the construction of future libraries.

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HiCUP classification

HiCUP specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

HiCUP distribution

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