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Hi-C User Pipeline HiCUP

A tool for mapping and performing quality control on Hi-C data. HiCUP is designed to take the raw sequence output from a HiC experiment and produce a filtered set of mapped interaction pairs, suitable for subsequent analysis. It will also produce a set of metrics which can be used to assess the quality of the data and help improve the construction of future libraries.

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HiCUP classification

HiCUP specifications

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Command line interface
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GNU General Public License version 2.0

HiCUP distribution


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