HIA specifications


Unique identifier OMICS_00666
Name HIA
Alternative name Hybrid Index based sequence Alignment
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Maintained Yes


No version available

HIA citation


HIA: a genome mapper using hybrid index based sequence alignment

PMCID: 4688996
PMID: 26702294
DOI: 10.1186/s13015-015-0062-4

[…] rent NGS mapping tools. Here, we tried to merge the advantages of HT-based and suffix tree-based alignment in a tool that satisfies these requirements. To this end, we developed a genome mapper using hybrid index-based sequence alignment (HIA).In this article, we describe the HIA tool, and show the results of comparisons of performance on simulated and real read data between HIA and the other four […]

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