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HiBrowse specifications

Information


Unique identifier OMICS_03316
Name HiBrowse
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jos Paulsen <>

Publication for HiBrowse

HiBrowse in pipeline

2017
PMCID: 5346121
PMID: 28078515
DOI: 10.1007/s10577-016-9546-4

[…] signatures to provide context of interactions., an alternative analysis aims to identify functional interactions by characterising differential contacts between two cell types or conditions. homer, hibrowse and diffhic were developed for detecting differential interactions in hic data, built upon previous methods that were originally applied to identify differentially expressed genes in rna-seq […]


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HiBrowse in publications

 (2)
PMCID: 5346121
PMID: 28078515
DOI: 10.1007/s10577-016-9546-4

[…] signatures to provide context of interactions., an alternative analysis aims to identify functional interactions by characterising differential contacts between two cell types or conditions. homer, hibrowse and diffhic were developed for detecting differential interactions in hic data, built upon previous methods that were originally applied to identify differentially expressed genes in rna-seq […]

PMCID: 4556012
PMID: 26328929
DOI: 10.1186/s13059-015-0745-7

[…] model that also controls for compartmental structure and the domain organization along the chromosomes. these statistical tests, together with others, are made available through a web-based tool, hibrowse []., all of the hypergeometric and sampling-based approaches we have discussed so far perform the significance tests using contact counts, and, usually, by dichotomizing the pairs as ‘close’ […]


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HiBrowse institution(s)
Institute for Cancer Genetics and Informatics, Oslo University Hospital, Nydalen, Oslo; Department of Informatics, University of Oslo, Oslo; Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Nydalen, Oslo; Department of Mathematics, University of Oslo, Oslo; ELIXIR project, Department of Informatics, University of Oslo, Oslo, Norway

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