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HiC-3DViewer

Simplifies the 3D exploratory analysis of High Chromosome Contact map (Hi-C) data. HiC-3DViewer is an interactive chromatin visualization tool that maps genome-scale interactions to identify structural characteristics and interactions between all chromosomes. It allows user to highlight any specific genomic regions through the usage of an interactive 2D Hi-C contact map or by uploading a BED file of given regions.

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HiC-3DViewer classification

HiC-3DViewer specifications

Interface:
Web user interface
Programming languages:
Javascript, Python
Maintained:
Yes
Restrictions to use:
None
Computer skills:
Basic

HiC-3DViewer distribution

download

HiC-3DViewer support

Maintainers

  • Juntao Tony Gao <>
  • Michael Zhang <>

Credits

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Publications

Institution(s)

MOE Key Laboratory of Bioinformatics; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST, Tsinghua University, Beijing, China; Department of Automation, Tsinghua University, Beijing, China; School of Pharmaceutical Sciences, Tsinghua University, Beijing, China; Department of Biological Sciences, Center for Systems Biology, The University of Texas at Dallas, Richardson, TX, USA

Funding source(s)

Supported by State Key Research Development Program of China (No. 2016YFC1200303), and the National Natural Science Foundation of China (Nos. 31361163004 and 31671383).

Link to literature

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