HiCAGE specifications

Information


Unique identifier OMICS_29526
Name HiCAGE
Alternative name Hi-C Annotation and Graphics Ensemble
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Dennis Hazelett <>

Additional information


https://junkdnalab.shinyapps.io/hicage/

Information


Unique identifier OMICS_29526
Name HiCAGE
Alternative name Hi-C Annotation and Graphics Ensemble
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some generic chromatin state annotations.
Output data A data frame with unique annotations for each interaction region and its nearest gene.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Dennis Hazelett <>

Additional information


https://junkdnalab.shinyapps.io/hicage/

Publication for Hi-C Annotation and Graphics Ensemble

HiCAGE institution(s)
Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA, USA; Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, Brazil
HiCAGE funding source(s)
Supported by National Institutes of Health UO1CA184826 awarded and RO1CA190182.

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