HiCDB specifications

Information


Unique identifier OMICS_31935
Name HiCDB
Alternative name RHiCDB
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A raw or normalized contact matrix.
Output data PDF
Output format A containing figure showing CDBs on single Hi-C map or different kinds of CDBs between two Hi-C maps.
Operating system Unix/Linux
Programming languages MATLAB, R
Computer skills Advanced
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Maintainer


  • person_outline Yang Chen

Additional information


An R version of HiCDB is also available: https://github.com/ChenFengling/RHiCDB

Publication for HiCDB

HiCDB institution(s)
MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Bioinformatics Division, BNRist, Department of Automation, Tsinghua University, Beijing, China; Department of Biology, Medi-X Institute, SUSTech Academy for Advanced Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen, China; MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Medicine, Tsinghua University, Beijing, China; Department of Biological Sciences, Center for Systems Biology, Richardson, TX, USA
HiCDB funding source(s)
Supported by the National Natural Science Foundation of China [31871343, 31671384, 91729301], the National Key Research and Development Program of China [2017YFA0505503, 2018YFB0704304] and the Cross-discipline Foundation of Tsinghua University [20161080043].

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