HiChIP specifications

Information


Unique identifier OMICS_05377
Name HiChIP
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements Cython, Numpy, FastQC, BWA, MACS, SICER, IGVTools, Samtools, MEME, CEAS, Picard, BEDTools
Source code URL https://s3-us-west-2.amazonaws.com/mayo-bic-tools/chipseq/chipseq_release.tgz
Maintained Yes

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Publication for HiChIP

HiChIP institution(s)
Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA; Epigenomics Translational Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, USA
HiChIP funding source(s)
Supported by the Center for Individualized Medicine, Mayo Clinic, Rochester, MN.

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