hiclipr specifications


Unique identifier OMICS_16327
Name hiclipr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Ensure that the executable files are named ‘bowtie’, ‘samtools’, ‘sambamba’, ‘cutadapt’, and ‘RNAhybrid’.
Operating system Unix/Linux, Mac OS
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.3.1
Stability Stable
Requirements Bowtie, Samtools, Sambamba, Cutadapt, RNAhybrid
Maintained Yes


  • Primates
    • Homo sapiens



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  • person_outline Anob Chakrabarti <>

Publication for hiclipr

hiclipr funding source(s)
The project was supported by funding from the European Research Council (617837-Translate), the Wellcome Trust Joint Investigator Award (103760/Z/14/Z), the Nakajima Foundation Fellowship, MRC Centenary Early Career Award, Wellcome Trust PhD Training Fellowship for Clinicians, and the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC001002), the UK Medical Research Council (FC001002), and the Wellcome Trust (FC001002).

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