HiCPlotter statistics

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Associated diseases

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HiCPlotter specifications

Information


Unique identifier OMICS_10001
Name HiCPlotter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements
Numpy, Matplotlib, Scipy
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Lynda Chin <>

Publication for HiCPlotter

HiCPlotter in publications

 (2)
PMCID: 5389712
PMID: 28334773
DOI: 10.1093/nar/gkx145

[…] algorithm from juicer which used as input a specialized .hic format, all other tools used different formats of binned hi-c interaction matrices. tad predictions from each tool were visualized using hicplotter ()., three different gm12878 data set sequencing depths were used to assess tool performance; the full data set, containing over 1.5 billion interactions (labeled ‘1.5b’), a randomly […]

PMCID: 5290626
PMID: 28159004
DOI: 10.1186/s13059-017-1161-y

[…] to process raw hi-c reads into a contact matrix, but other toolkits are available to automate such tasks (reviewed in []). in addition to the tools we reviewed here, software packages such as hicplotter [] and hitc [] offer visualization capabilities but require programming capabilities., we have discussed visualization of raw or normalized hi-c data, but other transformations of the data […]


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HiCPlotter institution(s)
Department of Genomic Medicine, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA

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