HiCRep specifications


Unique identifier OMICS_15054
Name HiCRep
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes



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  • person_outline Qunhua Li <>

Publications for HiCRep

HiCRep in publication

PMCID: 5803259
PMID: 29416042
DOI: 10.1038/s41467-018-03017-1

[…] appear to work better than others in combination with lasso. in addition, we also evaluated an alternative “smoothing” method, 2d mean filter smoothing, recently made available as part of the hicrep package. in fig. , we show the results of the comparison of the three correction methods in combination with the smoothing techniques using two metrics: preservation of cell-type specificity […]

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HiCRep institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA
HiCRep funding source(s)
Supported by NIH training grant T32 GM102057 (CBIOS training program to The Pennsylvania State University), a Huck Graduate Research Innovation Grant, and by NIH grants R01GM109453, U01CA200060, R24DK106766, U54HG006998, and U41HG007000.

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