hiddenDomains statistics

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hiddenDomains specifications

Information


Unique identifier OMICS_11419
Name hiddenDomains
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM
Output format BED
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, R
License GNU General Public License version 2.0
Computer skills Advanced
Version 3.0
Stability Stable
Requirements
SAMtools
Maintained Yes

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Maintainer


  • person_outline Joshua Starmer <>

Additional information


http://hiddendomains.sourceforge.net/

Publication for hiddenDomains

hiddenDomains in publication

PMCID: 5081244
PMID: 27812282
DOI: 10.4137/BBI.S40628

[…] the literature; we chose them based on their publications and also on the recommendations of relevant reviews and benchmarks., we tested sicer (v1.1), macs (v1.4.2 and v2.0.9), zinba (v2.02.02), hiddendomains (v2.2), broadpeak (unversioned), and rseg (v0.4.4) on our data sets generated in-house (in the same way as we have described above the generation of control data sets, using […]


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hiddenDomains institution(s)
Department of Genetics, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
hiddenDomains funding source(s)
Supported by the National Institutes of Health [NIH R01GM10974].

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