HISAT specifications

Unique identifier:
OMICS_07225
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Beta
Name:
Hierarchical Indexing for Spliced Alignment of Transcripts
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
Version:
0.1.5
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA

Funding source(s)

This work was supported in part by the National Human Genome Research Institute (US National Institutes of Health) under grants R01-HG006102 and R01-HG006677 to S.L.S.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
Arup Ghosh's avatar image Arup Ghosh's country flag

Arup Ghosh

star_border star_border star_border star_border star_border
star star star star star

Hisat is one of the best and fastest RNA-seq data aligner available till date. Mouse transcriptome data with ~30 million reads took only 30mins for alignment. There are a lot other alignment-free alternatives available now but for getting insight about spliced variants Hisat is the best tool to use.