HighSSR statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

HighSSR specifications


Unique identifier OMICS_00107
Name HighSSR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Roche
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes



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  • person_outline Alexander Churbanov <>

Publication for HighSSR

HighSSR in publication

PMCID: 3856076
PMID: 24240810
DOI: 10.3390/ijms141122499

[…] previously localized near the pi-z locus [], were obtained from the gramene website (http://www.gramene.org/) [] and also included in primer testing []., next-generation sequencing technologies (highssr, roche 454 gs flx) are now being used for microsatellite discovery with significant savings in cost and time [–]. rapid progress in dna sequencing technologies has substantially reduced costs […]

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HighSSR institution(s)
New Mexico State University, Biology Department, Las Cruces, NM, USA; Beijing Institute of Genomics (BIG), Beijing, China; Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA
HighSSR funding source(s)
Supported by National Science Foundation (DBI-0821806, DEB-0817033); Chinese Academy of Sciences Fellowship for Young International Scientists (2011Y1SA09); and National Natural Science Foundation of China (31150110466).

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