HilbertVis statistics

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Citations per year

Number of citations per year for the bioinformatics software tool HilbertVis
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HilbertVis specifications

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Unique identifier OMICS_00627
Name HilbertVis
Alternative name r-bioc-hilbertvis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.38.0
Stability Stable
Requirements
grid, IRanges, lattice, R(>=2.6.0), EBImage
Maintained Yes

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Publication for HilbertVis

HilbertVis citations

 (4)
library_books

Evolutionary Transition from Pathogenicity to Commensalism: Global Regulator Mutations Mediate Fitness Gains through Virulence Attenuation

2015
Mol Biol Evol
PMCID: 4651237
PMID: 26199376
DOI: 10.1093/molbev/msv160

[…] agstat option, basic statistics were calculated and per-base coverage was counted using genomeCoverageBed within the Bedtools package (). Coverage was further analyzed in R and Bioconductor using the HilbertVis and ShortRead packages. […]

library_books

Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery

2013
PMCID: 3689807
PMID: 23589517
DOI: 10.1534/g3.112.004994

[…] be conveniently visualized as a space filling curve that attempts to preserve proximity during its transformation to an increased number of dimensions. shows Hilbert plots generated using R with the HilbertVis () and Bioconductor () packages (see Figure S1 for more information on Hilbert plots). Only scaffold 2 is shown; scaffolds 1–12 are shown in the supplementary data. White sections in repre […]

library_books

Cell type–specific genomics of Drosophila neurons

2012
Nucleic Acids Res
PMCID: 3479168
PMID: 22855560
DOI: 10.1093/nar/gks671

[…] l scripts. Plots were made using the R project (R Development Core Team, 2010) and genome landscapes visualized using the Broad Integrated Genomics Viewer (). Hilbert curves were visualized using the HilbertVis R package (). […]

library_books

First somatic mutation of E2F1 in a critical DNA binding residue discovered in well differentiated papillary mesothelioma of the peritoneum

2011
Genome Biol
PMCID: 3308059
PMID: 21955916
DOI: 10.1186/gb-2011-12-9-r96

[…] ins every nucleotide of the exome and its associate sequencing depth sorted by chromosomal coordinates. For the visualization of the entire exome, we used the statistical program R, and in particular HilbertVis, a compact graphical representation of linear data packages []. Instead of linearly plotting the sequencing depth versus the exome DNA string, a Hilbert plot computationally wraps the DNA s […]


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HilbertVis institution(s)
European Bioinformatics Institute (EMBL-EBI), Hinxton, UK

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