HilbertVis specifications

Information


Unique identifier OMICS_00627
Name HilbertVis
Alternative name r-bioc-hilbertvis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.38.0
Stability Stable
Requirements
grid, IRanges, lattice, R(>=2.6.0), EBImage
Maintained Yes

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Publication for HilbertVis

HilbertVis in publications

 (2)
PMCID: 3479168
PMID: 22855560
DOI: 10.1093/nar/gks671

[…] scripts. plots were made using the r project (r development core team, 2010) and genome landscapes visualized using the broad integrated genomics viewer (). hilbert curves were visualized using the hilbertvis r package ()., the dna constructs described in this article are available at addgene (http://www.addgene.org). all data have been deposited in national center for biotechnology […]

PMCID: 3308059
PMID: 21955916
DOI: 10.1186/gb-2011-12-9-r96

[…] overall exome capturing and sequencing were successful, generating large amounts of good quality data., a novel way to visualize large copy number changes using exome sequencing data is the use of hilbertvis [], an r statistical package, to plot exome sequencing depth versus chromosomal position in a compact graphical manner. copy number changes, if present, will reveal […]


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HilbertVis institution(s)
European Bioinformatics Institute (EMBL-EBI), Hinxton, UK

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