HiMAP specifications


Unique identifier OMICS_23481
Name HiMAP
Alternative name Highly Multiplexed Amplicon-based Phylogenomics
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Python, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Scott Geib

Publication for Highly Multiplexed Amplicon-based Phylogenomics

HiMAP institution(s)
U.S. Department of Agriculture-Agricultural Research Service, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Hilo, HI, USA; Department of Plant and Environmental Protection Services, University of Hawaii at Manoa, Honolulu, HI, USA; Department of Plant, Soil and Entomological Sciences, University of Idaho, Moscow, ID, USA
HiMAP funding source(s)
Supported by United States Department of Agriculture (USDA) Animal and Plant Health Inspection Service (APHIS) Farm Bill Section 10007 projects “Diagnostic Resources to Support Fruit Fly Exclusion and Eradication, 2012-2014” and “Genomic approaches to fruit fly exclusion and pathway analysis, 2015-2016” to USDA-APHIS, USDA-ARS and UH Manoa (projects 3.0251.02 and 3.01251.03 (FY 2014), 3.0256.01 and 3.0256.02 (FY 2015), and 3.0392.02 and 3.0392.03 (FY 2016)).

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