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Publication for HIPdb
A Large Scale Structural Classification of Antimicrobial Peptides
[…] ADAM contains 7,007 unique AMP sequences extracted from twelve databases (). The twelve databases include APD2 , AVPpred , BACTIBASE , BAGEL3 , CAMP2 , DADP , DAMPD , HIPdb , PenBase , PhytAMP , RAPD , and YADAMP . The AMP sequences in ADAM were mostly derived from natural sources, covering a broad spectrum of species such as archaea, bacteria, plants, an […]
Integrated Analysis of Residue Coevolution and Protein Structures Capture Key Protein Sectors in HIV 1 Proteins
[…] We first collected the candidate HIV inhibitory peptides from HIPdb database . We built up a structure library for these peptides using Open Babel toolbox (version 2.3.1) . Then, we performed screening peptide library against all the 15 HIV proteins using Li […]
Analysis and Prediction of Highly Effective Antiviral Peptides Based on Random Forests
[…] h great importance need not to be the abundant residues. Our analyses showed that the AVPs were abundant in leucine, lysine, alanine, and glutamic acid ( and ), which supports the previous finding by HIPdb . Several other interesting properties were found in our analysis, but we only emphasized lysine, for this finding was supported by various feature ranking methods. However, why the AVPs were bi […]
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