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HIPdb specifications


Unique identifier OMICS_05723
Name HIPdb
Restrictions to use None
Maintained Yes

Publication for HIPdb

HIPdb citations


A Large Scale Structural Classification of Antimicrobial Peptides

Biomed Res Int
PMCID: 4426897
PMID: 26000295
DOI: 10.1155/2015/475062
call_split See protocol

[…] ADAM contains 7,007 unique AMP sequences extracted from twelve databases (). The twelve databases include APD2 [], AVPpred [], BACTIBASE [], BAGEL3 [], CAMP2 [], DADP [], DAMPD [], HIPdb [], PenBase [], PhytAMP [], RAPD [], and YADAMP []. The AMP sequences in ADAM were mostly derived from natural sources, covering a broad spectrum of species such as archaea, bacteria, plants, an […]


Integrated Analysis of Residue Coevolution and Protein Structures Capture Key Protein Sectors in HIV 1 Proteins

PLoS One
PMCID: 4324911
PMID: 25671429
DOI: 10.1371/journal.pone.0117506

[…] We first collected the candidate HIV inhibitory peptides from HIPdb database []. We built up a structure library for these peptides using Open Babel toolbox (version 2.3.1) []. Then, we performed screening peptide library against all the 15 HIV proteins using Li […]


Analysis and Prediction of Highly Effective Antiviral Peptides Based on Random Forests

PLoS One
PMCID: 3734225
PMID: 23940542
DOI: 10.1371/journal.pone.0070166

[…] h great importance need not to be the abundant residues. Our analyses showed that the AVPs were abundant in leucine, lysine, alanine, and glutamic acid ( and ), which supports the previous finding by HIPdb . Several other interesting properties were found in our analysis, but we only emphasized lysine, for this finding was supported by various feature ranking methods. However, why the AVPs were bi […]


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HIPdb institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research, Chandigarh, India

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