hiReadsProcessor

Contains set of functions which allow users to process ligation-mediated polymerase chain reaction (LM-PCR) products sequenced using any platform. hiReadsProcessor gives an excel/txt file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. Genomic products are further processed for quality control (QC) and abundance quantification. This software also offers functions to prepend name attribute of a list to DNAStringSet, to add a specific feature/attribute to the sampleInfo object and many others.