hiReadsProcessor statistics
hiReadsProcessor specifications
Information
| Unique identifier | OMICS_16071 |
|---|---|
| Name | hiReadsProcessor |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Output data | Parameters for demultiplexing and sample metadata. |
| Output format | XLS, TXT |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | R |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Version | 1.16.0 |
| Stability | Stable |
| Requirements |
methods, BiocGenerics, GenomicRanges, testthat, Biostrings, GenomicAlignments, dplyr, BiocParallel, knitr, R(>=3.0), hiAnnotator, sonicLength, rSFFreader, readxl
|
| Maintained | Yes |
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Versioning
No version available
Documentation
Maintainer
- person_outline Nirav Malani <>
hiReadsProcessor citation
library_books
HIV latency and integration site placement in five cell based models
2013
PMCID: 3765678
PMID: 23953889
DOI: 10.1186/1742-4690-10-90
[…] with restriction enzymes msei and tsp509 and ligated to adapters. proviral ltr-host genome junctions were sequenced by 454 pyrosequencing after nested pcr., all datasets were processed using the hireadsprocessor r package []. adaptor trimmed reads were aligned to ucsc freeze hg19 using blat []. genomic alignments were scored and required to start within the first three bases of a read […]
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