Protocols
hiReadsProcessor specifications
Information
| Unique identifier | OMICS_16071 |
|---|---|
| Name | hiReadsProcessor |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Output data | Parameters for demultiplexing and sample metadata. |
| Output format | XLS, TXT |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | R |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Version | 1.16.0 |
| Stability | Stable |
| Requirements |
methods, BiocGenerics, GenomicRanges, testthat, Biostrings, GenomicAlignments, dplyr, BiocParallel, knitr, R(>=3.0), hiAnnotator, sonicLength, rSFFreader, readxl
|
| Maintained | Yes |
Download
Versioning
No version available
Documentation
Maintainer
- person_outline Nirav Malani
hiReadsProcessor citation
call_split
HIV latency and integration site placement in five cell based models
2013
Retrovirology
PMCID: 3765678
PMID: 23953889
DOI: 10.1186/1742-4690-10-90
call_split See protocol
[…] All datasets were processed using the hiReadsProcessor R package []. Adaptor trimmed reads were aligned to UCSC freeze hg19 using BLAT []. Genomic alignments were scored and required to start within the first three bases of a read with 98 […]
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