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|Restrictions to use||None|
|Database management system||MySQL|
|Data access||File download, Browse|
|User data submission||Not allowed|
- person_outline An Panchenko
Publications for HistoneDB
Systematic quantitative analysis of H2A and H2B variants by targeted proteomics
[…] Mass spectrometry RAW files were submitted to Mascot Daemon (version 2.5.1). MS/MS data acquired on histones were matched to the mouse MS_HistoneDB  and to a list of about 500 contaminants including keratins, trypsin, etc. The following modifications were considered as variable ones: N-terminal protein acetylation; Lys acetylation; Ly […]
Hydroxyl radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning
[…] c nucleosome with 601TA DNA sequence (601TA-NUC) was built based on Xenopus laevis nucleosome structure with 601 DNA (PDB ID: 3LZ0) using Modeller () and 3DNA (). Histone sequences were obtained from HistoneDB 2.0 database (). The model of yeast centromeric nucleosome on CEN3 DNA sequence (CEN3-NUC) was built using the same methods based on X. laevis nucleosome structure with α-satellite DNA (PDB […]
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones
[…] ]*\) and the description rule \(.*\). In addition, the taxonomy and sequence report sources are indicated as “Swiss-Prot FASTA” and “FASTA file”, respectively. No taxonomy was specified when using MS_HistoneDB with Mascot Daemon.Classical histone modifications were included in the variable modifications: N-terminal protein acetylation; Lys acetylation; and Lys and Arg mono- or di-methylation. For […]
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