histoneHMM specifications

Unique identifier:
OMICS_07720
Interface:
Command line interface
Input data:
Some bivariate read counts.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.7
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Output data:
Probabilistic classifications of genomic regions as being either modified in both samples, unmodified in both samples or differentially modified between samples.
Programming languages:
C++, Fortran, R
Computer skills:
Advanced
Stability:
Stable

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histoneHMM distribution

download

histoneHMM support

Documentation

Maintainer

  • Matthias Heinig <>

Additional information

http://histonehmm.molgen.mpg.de/

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Credits

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Publications

Institution(s)

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany; Experimental Genetics Group, Max-Delbrück-Center for Molecular Medicine, Berlin, Germany; Quantitative Epigenetics, European Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands; Institute of Physiology, Academy of Sciences of the Czeck Republic, Prague, Czech Republic; Groningen Bioinformatics Center, University of Groningen, Groningen, The Netherlands

Funding source(s)

Supported by funding from the EU EURATRANS award (HEALTHF4-2010-241504), by grants from the Bundesministerium für Bildung und Forschung (BMBF): GCCR and NGFN-plus Heart Failure Network and Deutsches Epigenom Programm (DEEP)’[01KU1216C], the Deutsche Forschungsgemeinschaft (DFG, HU 1522/1-1), an EMBO long-term fellowship (ALTF 1156-2009), grants from the Netherlands Organization for Scientific Research (NWO), a Rosalind Franklin Fellowship from the University of Groningen and by grant 13-04420S from the Grant Agency of the Czech Republic.

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