HIT’nDRIVE specifications
- Unique identifier:
- OMICS_19693
- Software type:
- Application/Script
- Restrictions to use:
- None
- Programming languages:
- C++
- Computer skills:
- Advanced
- Requirements:
- make, g++, IBM ILOG CPLEX Optimization Studio
- Name:
- HIT’nDRIVE
- Interface:
- Command line interface
- Operating system:
- Unix/Linux
- License:
- MIT License
- Stability:
- Stable
- Maintained:
- Yes
versioning
No versioning.
HIT’nDRIVE distribution
download
HIT’nDRIVE support
Maintainers
- S. Cenk Sahilp <>
- Cenk Sahinalp <>
forum
No open topic.
Credits
Publications
-
(Shrestha et al., 2017)
HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology.
Genome Res.
PMID: 28768687 DOI: 10.1101/gr.221218.117 -
(Shrestha et al., 2014)
HIT’nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time.
DOI: 10.1007/978-3-319-05269-4_23
Institution(s)
Bioinformatics Training Program, University of British Columbia, Vancouver, BC, Canada; Laboratory for Advanced Genome Analysis, Vancouver Prostate Centre, Vancouver, BC, Canada; School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Computer Laboratory, University of Cambridge, Cambridge, UK; National Center for Biotechnology Information, NLM, NIH, Bethesda, MD, USA; Department of Information Engineering, University of Padova, Padova, Italy; Faculty of Information Technology, Monash University, Melbourne, VIC, Australia; Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada; School of Informatics and Computing, Indiana University, Bloomington, IN, USA
Funding source(s)
Supported by Canadian Cancer Society Research Institute, Natural Sciences and Engineering Research Council of Canada (NSERC) Discover Grants, Terry Fox Research Institute, Mitacs Accelerate Awards, Prostate Cancer Foundation - BC Research Award and Canadian Institutes of Health Research (CIHR) Bioinformatics Training Program, and NSERC-CREATE Computational Methods for the Analysis of the Diversity and Dynamics of Genomes (MADD-Gen) program.
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