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HiTC

Facilitates the exploration of high-throughput 3C-based data. HiTC allows users to import and export ‘C’ data, to transform, normalize, annotate and visualize interaction maps. It proposes a powerful and extensible framework for visualizing and exploring high-throughput C data and is able to handle both 5C and Hi-C data and offers new functionalities such as standard import, data transformation and integrative visualization methods. The HiTC package is aimed at biologists interested in investigating their data and at biostatisticians involved in the development of new statistical methods which can be applied to C data.

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2 user reviews

2 user reviews

L. Behagle's avatar image

L. Behagle

A good tool to explore Hi-C data together with the statistical power of R

C.Jin's avatar image

C.Jin

Very nice package. Well maintained and up-to-date !

HiTC forum

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HiTC classification

HiTC specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Stability:
Stable

HiTC distribution

versioning

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No versioning.

HiTC support

Documentation

Maintainer

  • Nicolas Servant <>

Credits

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Publications

Institution(s)

Institut Curie, Paris, France

Link to literature

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