HIV-1 Sequence Quality Analysis Tool statistics

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HIV-1 Sequence Quality Analysis Tool specifications

Information


Unique identifier OMICS_24693
Name HIV-1 Sequence Quality Analysis Tool
Interface Web user interface
Restrictions to use None
Input data A protein.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

HIV-1 Sequence Quality Analysis Tool citations

 (3)
library_books

Sequencing and Phylogenetic Analysis of Near Full Length HIV 1 Subtypes A, B, G and Unique Recombinant AC and AD Viral Strains Identified in South Africa

2015
AIDS Res Hum Retroviruses
PMCID: 4378615
PMID: 25492033
DOI: 10.1089/aid.2014.0230

[…] The HIV-1 sequence quality analysis tool was run before further analysis (www.hiv.lanl.gov/content/sequence/QC/index.html).Sequences were then screened with online HIV-1 viral subtyping and recombinant de […]

library_books

HIV 1 diversity in an antiretroviral treatment naïve cohort from Bushbuckridge, Mpumalanga Province, South Africa

2015
Virol J
PMCID: 4340098
PMID: 25889106
DOI: 10.1186/s12985-015-0244-1

[…] emble the trace data into contiguous fragments, which were then verified, edited and saved as text files for subsequent analysis. All sequences were checked for quality assurance using the Los Alamos HIV-1 Sequence Quality Analysis tool (http://www.hiv.lanl.gov/content/sequence/QC/index.html) before further analyses and submission to GenBank. […]

library_books

HIV 1 Subtypes B and C Unique Recombinant Forms (URFs) and Transmitted Drug Resistance Identified in the Western Cape Province, South Africa

2014
PLoS One
PMCID: 3946584
PMID: 24609015
DOI: 10.1371/journal.pone.0090845

[…] ing overlapping primers. Sequences were read and assembled into contigs using Sequencher v 5.1 (Gene Codes Corporation, Ann Arbor, MI, USA). All sequences were checked for quality assurance using the HIV-1 Sequence Quality Analysis tool (http://www.hiv.lanl.gov/content/sequence/QC/index.html) before further analyses. […]

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