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HIV databases specifications


Unique identifier OMICS_03075
Name HIV databases
Alternative name HIV Sequence Database
Restrictions to use None
Maintained Yes


  • Viruses
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2


  • person_outline CombiNAber Team

HIV databases citations


Efficacy Analysis of Combinatorial siRNAs against HIV Derived from One Double Hairpin RNA Precursor

Front Microbiol
PMCID: 5581867
PMID: 28900421
DOI: 10.3389/fmicb.2017.01651

[…] In order to choose RNAi targets with the potential to alter HIV-1 replication, we consulted previous studies and online HIV-1 resources, including HIV Databases and the siVirus online tool (). Finally, four highly conserved RNAi targets located in two structural genes (gag and env) and two non-structural genes (tat and vpu) were chosen as shown […]


An Introduction to B Cell Epitope Mapping and In Silico Epitope Prediction

J Immunol Res
PMCID: 5227168
PMID: 28127568
DOI: 10.1155/2016/6760830

[…] software.BepiPred predicts continuous epitopes by combining two residues properties with Hidden Markov Model. BepiPred was evaluated on dataset of epitopes extracted from the literature, AntiJen, and HIV databases. This method has a quite low sensitivity [].The server BcePred is used for prediction of continuous B-cell epitopes based on physicochemical properties and allows user to select any resi […]


Shift in HIV/AIDS Epidemic in Southeastern China: A Longitudinal Study from 1987 to 2015

PMCID: 4997480
PMID: 27509511
DOI: 10.3390/ijerph13080794
call_split See protocol

[…] rsion 4.0, phylogenetic tree was constructed using the neighbor-joining (NJ) algorithm. The genotype was initially identified using the BLAST and RIP programs in the Los Alamos National Laboratory of HIV Databases (, and validated based on the phylogenetic tree analysis. Finally, the genotypes of the pol, gag and env gene regions were identified. […]


Community Based HIV 1 Early Diagnosis and Risk Behavior Analysis of Men Having Sex with Men in Hong Kong

PLoS One
PMCID: 4410921
PMID: 25915755
DOI: 10.1371/journal.pone.0125715
call_split See protocol

[…] To eliminate potential contamination, all of the obtained sequences were first subjected to an HIV-1 Blast search to compare these sequences with related reference sequences in the HIV Databases, which are funded by the Division of AIDS of the National Institute of Allergy and Infectious Diseases (NIAID), a part of the National Institutes of Health (NIH) ( […]


The Combination of Phylogenetic Analysis with Epidemiological and Serological Data to Track HIV 1 Transmission in a Sexual Transmission Case

PLoS One
PMCID: 4373787
PMID: 25807147
DOI: 10.1371/journal.pone.0119989
call_split See protocol

[…] Sequencher 5.0 (Gene Codes, Ann Arbor, MI). ClustalW Multiple alignment and manual editing were performed using Bio-Edit 7.0 software. The reference sequences were obtained from the NIH/NIAID-funded HIV Databases (, covering the major HIV-1 subtypes/CRFs.Genetic distance calculations and phylogenetic analyses were performed with MEGA (Molecular Evolutionary G […]


Low prevalence of the transmitted HIV 1 drug resistance among newly diagnosed HIV 1 individuals in Jiangsu Province, China during 2009–2011

BMC Public Health
PMCID: 4330929
PMID: 25879488
DOI: 10.1186/s12889-015-1489-8
call_split See protocol

[…] sequenced in 3730X DNA Analyzer System.To eliminate potential laboratory contamination, all sequences were first subjected to an HIV-1 Blast search to compare with related reference sequences in the HIV Databases sponsored of the Division of AIDS of the National Institute of Allergy and Infectious of AIDS (NIAID), The National Institute of Health (NIH) ( Nucleotide s […]


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